Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs79216173 chr4:70100324 C/T 4.7E-13 119 41.77 35 6 KM Plot
THYM rs79267970 chr2:30686520 C/T 1.5E-8 118 38.33 50.07 33.13 KM Plot
THYM rs7927277 chr11:16499691 T/G 8.69E-9 119 40.67 52.22 7.15 KM Plot
THYM rs79282203 chr13:106585017 T/G 7.9E-5 118 38.33 56.8 28.43 KM Plot
THYM rs79285420 chr2:30862218 G/A 1.38E-8 119 36.03 50.13 33.13 KM Plot
THYM rs7929513 chr11:125584487 C/T 0.000188 119 44.38 35.67 23.42 KM Plot
THYM rs79309479 chr2:10955410 C/G 0.000218 117 42.9 38.58 62.72 KM Plot
THYM rs7931848 chr11:2270029 C/A 2.31E-6 117 42.9 32.7 25.83 KM Plot
THYM rs79326506 chr11:125346919 G/A 0.000242 119 42.73 37.73 NA KM Plot
THYM rs7932790 chr11:125590845 C/G 0.000188 119 23.42 35.67 44.38 KM Plot
THYM rs79344706 chr4:70076994 G/A 5.73E-13 118 39.75 49.6 6 KM Plot
THYM rs79407085 chr15:93975773 G/A 4.24E-13 117 40.67 50.07 6 KM Plot
THYM rs7941000 chr11:67464928 C/T 1.01E-5 119 46.27 38.13 34.87 KM Plot
THYM rs7941222 chr11:125563182 A/G 0.000214 117 45.87 36.9 23.42 KM Plot
THYM rs79414512 chr7:29725245 C/CGGCGGCT 3.51E-13 119 38.13 46.27 6 KM Plot